Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs150641967 chr19:19370340 TGACA/T 1.93E-5 502 21.7 26.17 15.05 KM Plot
LGG rs151067684 chr5:169011748 GGT/G 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs151096702 chr8:6186210 C/G 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs1556374 chr10:107929985 T/C 5.88E-5 500 21.6 29.53 13 KM Plot
LGG rs1556377 chr10:107969958 C/T 5.97E-7 509 21.7 27.02 12.77 KM Plot
LGG rs16823342 chr3:153673498 C/T 0 506 22.1 22.73 0.23 KM Plot
LGG rs1683565 chr19:880602 A/G 3.78E-5 509 20.73 25.87 19.83 KM Plot
LGG rs1683566 chr19:880560 G/A 3.86E-5 496 21 26.17 20.27 KM Plot
LGG rs16841112 chr4:7767318 C/T 3.07E-5 509 22.78 22.2 14.6 KM Plot
LGG rs16856165 chr2:10517278 T/C 1.08E-6 500 23.53 21.6 5.2 KM Plot
LGG rs16883624 chr6:53112290 C/G 1.19E-5 508 22.48 22.87 14.8 KM Plot
LGG rs16883629 chr6:53112652 A/G 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs16883632 chr6:53112991 C/T 1.85E-5 509 14.8 23.5 22.47 KM Plot
LGG rs16922480 chr9:678010 A/G 0 509 23.93 19.5 3.7 KM Plot
LGG rs16957590 chr16:67934725 C/T 3.97E-12 509 6.47 30.47 21.6 KM Plot